File Number: 16608

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- Project Information

File Number: 16608
Application Status: Application Complete
Project Title: San Joaquin River Restoration Program Interim Flows Program, Steelhead Monitoring Plan
Project Status: New
Previous Federal or State Permit/Authorization:
Permit/Authorization Requested:
  • ESA Section 10(a)(1)(A) permit (Pacific fish/invertebrate research) - Expired
Where will activities occur? California (including offshore waters)
State department of fish and game/wildlife:   N/A
Research Timeframe: Start: 01/27/2012    End: 03/31/2014
Sampling Season/Project Duration:
The sampling season for this activity would be for several seasons, including during the San Joaquin River Restoration Program (SJRRP) Interim Flows Project, during Water Year 2012 (WY 2012) and subsequent water years through March 31, 2014.  Further, the monitoring of Central Valley steelhead would only occur between December 1 or approximately the time that California Department of Fish and Game's Hills Ferry Barrier is removed from the San Joaquin River near the confluence of the Merced River, to the time that Vernalis Adaptive Management Program (VAMP) flows or similar flows begin on the tributaries in the lower San Joaquin River, approximately mid- to late-March.
Abstract:
The implementation of Interim Flows includes implementation of the Steelhead Monitoring Plan (SMP) to check for Central Valley steelhead in the Restoration Area (located between the Merced River confluence and Friant Dam) during spring Interim Flows. Hills Ferry Barrier, located on the San Joaquin River near the confluence of the Merced River, is a weir designed to discourage fish migration to the upper reaches of the San Joaquin River.  It is scheduled to be removed in mid-December. It is estimated that flows will occur as a result of VAMP or VAMP-like flows in the lower San Joaquin River tributaries from March 15th through April 30th. As a result, the critical timing for Central Valley steelhead monitoring within the Restoration Area would occur from mid-December through March 15th, as it is anticipated that steelhead would be attracted to tributary flows in the lower reaches. The Steelhead Monitoring Plan calls for the implementation of several options to monitor for steelhead that could make it past Hills Ferry Barrier. 

The SMP shall be utilized to detect the presence or absence of steelhead that may enter the Restoration Area. The sampling season will begin early to include fall-run Chinook salmon in the area. The impacts associated with the implementation of the SMP are anticipated to be minimal as historical data from the California Department of Fish and Game at the Hills Ferry Barrier for the monitoring of fish at the barrier have yet to record Central Valley steelhead at the facility.

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- Location/Take Information

Note: only currently authorized takes are displayed. A letter in the Version column indicates that the take line has been modified.
Location

Research Area: Pacific Ocean   State/Territory: CA 
Sub Basin (4th Field HUC): Middle San Joaquin-Lower Merced-Lower Stanislaus  Waterbody Name: San Joaquin River   Begin Mile: 182.0  End Mile: 118.0 
Depth Range Lower: 0 feet  Depth Range Upper: 8 feet
Location Description: The Steelhead Monitoring Plan will occur along locations on the San Joaquin River between the based of Sack Dam and the confluence of the Merced River.
Take Information
Line Species Listing Unit
or Stock
Production
or Origin
Life
Stage
Sex Expected
Take
Indirect
Mortality
Take Action Observe/
Collect Method
Procedure Run Transport
Record
Begin Date End Date Details Status
1 Steelhead California Central Valley (NMFS Threatened) Natural Unknown Male and Female 6 0 Capture/Mark, Tag, Sample Tissue/Release Live Animal Net, Fyke Fin Clip - Mark; Tag,Floy; Tissue Sample Scale Mixed N/A 01/27/2012 03/31/2012 Active
2 Steelhead California Central Valley (NMFS Threatened) Natural Unknown Male and Female 10 1 Capture/Mark, Tag, Sample Tissue/Release Live Animal Electrofishing, Boat Fin Clip - Mark; Tag,Floy; Tissue Sample Scale Mixed N/A 01/27/2012 03/31/2014 Active
3 Steelhead California Central Valley (NMFS Threatened) Natural Unknown Male and Female 2 0 Capture/Mark, Tag, Sample Tissue/Release Live Animal Net, Trammel Fin Clip - Mark; Tag,Floy; Tissue Sample Scale Mixed N/A 01/27/2012 03/31/2014 Active

- NEPA


1) If your activities will involve equipment (e.g., scientific instruments) or techniques that are new, untested,or otherwise have unknown or uncertain impacts on the biological or physical environment , please discuss the degree to which they are likely to be adopted by others for similar activities or applied more broadly.

The techniques utilized in the sampling methods for CV steelhead are customary.

2) If your activities involve collecting, handling, or transporting potentially infectious agents or pathogens (e.g., biological specimens such as live animals or blood), or using or transporting hazardous substances (e.g., toxic chemicals), provide a description of the protocols you will use to ensure public health and human safety are not adversely affected, such as by spread of zoonotic diseases or contamination of food or water supplies.

While this proposal includes transporting captured CV steelhead, the fish will be released back to the San Joaquin River from which they came.  There are no toxic chemicals proposed in association with this monitoring effort.

3) Describe the physical characteristics of your project location, including whether you will be working in or near unique geographic areas such as state or National Marine Sanctuaries, Marine Protected Areas, Parks or Wilderness Areas, Wildlife Refuges, Wild and Scenic Rivers, designated Critical Habitat for endangered or threatened species, Essential Fish Habitat, etc. Discuss how your activities could impact the physical environment, such as by direct alteration of substrate during use of bottom trawls, setting nets, anchoring vessels or buoys, erecting blinds or other structures, or ingress and egress of researchers, and measures you will take to minimize these impacts.

We will be working on capturing fish from sloughs and canals where habitat is unsuitable for the fish and relocate them to acceptable and suitable habitats within the Restoration Area.

4) Briefly describe important scientific, cultural, or historic resources (e.g., archeological resources, animals used for subsistence, sites listed in or eligible for listing in the National Register of Historic Places) in your project area and discuss measures you will take to ensure your work does not cause loss or destruction of such resources. If your activity will target marine mammals in Alaska or Washington, discuss measures you will take to ensure your project does not adversely affect the availability (e.g., distribution, abundance) or suitability (e.g., food safety) of these animals for subsistence uses.

The project will be implemented in a way to avoid adverse impacts to cultural and historic resources, consistent with Section 106 of the National Historic Preservation Act.  No activities planned here are proposed to modify the physical or aesthetic characteristics of any eligible properties.

5) Discuss whether your project involves activities known or suspected of introducing or spreading invasive species, intentionally or not, (e.g., transporting animals or tissues, discharging ballast water, use of equipment at multiple sites). Describe measures you would take to prevent the possible introduction or spread of non-indigenous or invasive species, including plants, animals, microbes, or other biological agents.

While this proposal includes transporting captured CV steelhead, the fish will be released back to the San Joaquin River from which they came.  There are no known or suspected results that could occur from the monitoring activities that could result in the intentional or unintentional spread of disease or invasive species in the restoration area.

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